Software for generating the PhysioBank Index

The software in this directory generates the PhysioBank Index. On the master PhysioNet server, the script make-pbi is run nightly; if any of the constituent data collections have been updated more recently than the Index, the corresponding segments of the Index are regenerated using pbindex and the Index is re-assembled by make-pbi from its segments.

pbindex accepts a list of record names from its standard input, generates index entries for them based on the contents of their .hea (header) and annotation files, and writes those entries to the standard output.

For correct operation of the PhysioBank Record Search software, the sequence of record names in the PhysioBank Index must be kept in (C locale) sorted order. make-pbi ensures that the record names are supplied to pbindex in the correct order.

The aftypes and sigtypes files are read at run time by pbindex; they provide up-to-date maps of annotator and signal names to annotator and signal classes. For example, the signal class ECG includes signals with a variety of (lead) names, such as I, II, III, aVR, aVF, etc. These maps are updated as data collections that include new signal and annotator names are added to PhysioBank.

This package of software can be downloaded as a tarball, or as individual files (below).

 Name                    Last modified      Size  Description
 Parent Directory                             -   
 Makefile                13-Mar-2012 15:48  620   'make' description file to automate installation
 aftypes                 10-May-2011 15:56  354   types of annotators
 make-pbi                15-May-2012 10:30  3.0K  script run nightly to keep PhysioBank Index up-to-date
 pbindex.c               13-Mar-2012 15:50   19K  reads record names and writes index entries
 sigtypes                26-Feb-2012 19:41  7.1K  types of signals