Resources


Database Restricted Access

MIMIC-III-Ext-Synthetic-Clinical-Trial-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, Brett Beaulieu-Jones

In our recent study, we used Llama-3.1-70B-Instruct to generate synthetic training examples resembling clinical trial eligibility criteria. We manually reviewed 1000 of these examples and release them here.

large language models synthetic data distillation clinical trial eligibility

Published: April 22, 2025. Version: 1.0.0

Database Open Access

SHDB-AF: a Japanese Holter ECG database of atrial fibrillation

Kenta Tsutsui, Shany Biton Brimer, Joachim Behar

Holter ECG database from Japan, containing data from 100 unique patients with paroxysmal AF including expert annotations of Supraventricular arrhythmias at the beat level.

atrial fibrillation ecg holters

Published: April 16, 2025. Version: 1.0.1

Database Credentialed Access

A Temporal Dataset for Respiratory Support in Critically Ill Patients

Mira Moukheiber, Lama Moukheiber, Dana Moukheiber, Sicheng Hao, Leo Anthony Celi, Hyung-Chul Lee

A benchmark dataset offering hourly records over a 90-day period for 50,920 ICU subjects, including dynamic pulmonary function data and a spectrum of covariates for respiratory intervention analyses.

oberservational data time-series

Published: April 15, 2025. Version: 1.1.0

Database Credentialed Access

AIPatient KG: MIMIC-III and CORAL Electronic Health Records based Patient Knowledge Graph

Lizhou Fan, Huizi Yu

This project integrates MIMIC-III and CORAL electronic health records into knowledge graphs to improve medical analysis and enhance decision-making capabilities. Resources include two knowledge graph snapshots and two question-and-answering datasets.

Published: April 15, 2025. Version: 1.0.0

Challenge Credentialed Access

ArchEHR-QA: BioNLP at ACL 2025 Shared Task on Grounded Electronic Health Record Question Answering

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

electronic health record question answering clinicians patient portals

Published: April 11, 2025. Version: 1.2

Database Restricted Access

Electrocardiogram-Capable Smartwatches: Assessing Their Clinical Accuracy and Application

Joaquin Recas, Mauro Buelga Suárez, Sergio González-Cabeza, Mario Sanz-Guerrero, Marian Diaz-Vicente, Alfonso Rebolleda, Luis Piñuel Moreno, Gonzalo Luis Alonso Salinas

This database allows the study of the feasibility of using ECG-capable smartwatches as diagnostic tools, focusing on their compliance with clinical standards and their ability to measure critical ECG parameters beyond AF detection.

ischemia fitbit sense ambulatory samsung galaxy watch st-segment apple watch withings scanwatch smartwatch

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, Yeasul Kim, Momsen Reincke, Lichy Han, Ben Deverett, Mohammad Amin Sadeghi, Abdel badih El Ariss, Marc Ghanem, David Seong, Andrew Lee, Caitlin Coombes, Brad Bradshaw, Mahir Sufian, Hyo Jung Hong, Teresa Nguyen, Mohammad Rasouli, Komal Kamra, Mark Burbridge, James McAvoy, Roya Saffary, Stephen Parnell Ma, Dev Dash, James Xie, Ellen Wang, Cliff Schmiesing, Nigam Shah, Nima Aghaeepour

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

artificial intelligence clinical notes natural language processing large language models brief hospital course electronic health records long-form text chart review text reranking atomic claim hybrid retrieval clinical informatics clinical medicine fact verification retrieval-augmented generation logical atomism text embedding formal logic llm-as-a-judge llm evaluation

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-CEKG: A Process-Oriented Dataset Derived from MIMIC-IV for Enhanced Clinical Insights

Milad Naeimaei Aali, Felix Mannhardt, Pieter Jelle Toussaint

The MIMIC-IV-Ext-CEKG dataset is crafted for object-centric process mining in healthcare, specifically to create clinical event knowledge graphs for patients with multimorbidity, as well as for data mining and machine learning tasks.

mimic process mining multi entity process mining object centric event log clinical event knowledge graph

Published: April 8, 2025. Version: 1.0.0

Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0