Resources
Database Credentialed Access
SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia
Nikolay Markov, Catherine A Gao, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni, Rogan Grant, Luke Rasmussen, Daniel Schneider, Justin Starren, Richard Wunderink, GR Scott Budinger, Alexander Misharin, Benjamin Singer, NU SCRIPT Study Investigators
Published: March 13, 2023. Version: 1.1.0
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
deidentification mimic critical care natural language processing clinical notes electronic health record
Published: Jan. 6, 2023. Version: 2.2
Database Contributor Review
BRATECA (Brazilian Tertiary Care Dataset): a Clinical Information Dataset for the Portuguese Language
Henrique Dias, Ana Helena Dias Pereira dos Ulbrich
prescriptions exams tertiary care natural language processing clinical notes
Published: July 14, 2022. Version: 1.1
Challenge Credentialed Access
ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care
Danielle Mowery
Published: Feb. 15, 2013. Version: 1.0
Model Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach
Published: March 17, 2022. Version: 1.0.1
Database Credentialed Access
MIMIC-II Clinical Database
Mohammed Saeed, Mauricio Villarroel, Andrew Reisner, Gari Clifford, Li-wei Lehman, George Moody, Thomas Heldt, Tin Kyaw, Benjamin Moody, Roger Mark
Published: April 24, 2011. Version: 2.6.0
Software Open Access
Transformer-DeID: Deidentification of free-text clinical notes with transformers
Callandra Moore, Lucas Bulgarelli, Tom Pollard, Alistair Johnson
deidentification neural networks transformers
Published: Nov. 2, 2023. Version: 1.0.0
Database Open Access
MIMIC-IV Clinical Database Demo on FHIR
Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Alistair Johnson
mimic electronic health records fhir
Published: June 7, 2022. Version: 2.0
Model Credentialed Access
What's in a Note? Unpacking Predictive Value in Clinical Note Representations
Tristan Naumann, William Boag
Published: Jan. 7, 2018. Version: 0.1
Challenge Credentialed Access
Analysis of Clinical Text: Task 14 of SemEval 2015
Guergana Savova
Published: Dec. 28, 2014. Version: 2.0