Resources


Database Credentialed Access

MIMIC-IV-Ext-Instr: A Dataset of 450K+ EHR-Grounded Instruction-Following Examples

Zhenbang Wu, Anant Dadu, Mike Nalls, Faraz Faghri, Jimeng Sun

This dataset contains 450K open-ended instruction-following examples generated using GPT-3.5 based on the MIMIC-IV EHR database.

large language models medical question answering instruction tuning

Published: Sept. 9, 2025. Version: 1.0.0

Software Open Access

Vital File Web Viewer: A Browser-Based Tool for Viewing High-Resolution Vital Signs Data

Eunsun Rachel Lee, Hyung-Chul Lee

A standalone, browser-based viewer for .vital files that enables interactive visualization of high-resolution vital signs data without server-side components.

vitaldb vital file

Published: Sept. 1, 2025. Version: 1.0.0

Database Credentialed Access

Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database

Vijeeth Guggilla, Melissa Bak, Mengjia Kang, Theresa Walunas, Catherine A Gao

This database contains 200 MIMIC-III admission notes with adjudicated labels for histories of various immunosuppressive conditions and usage of various immunosuppressive medications.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes

Nidhi Soley, MaKhaila Bentil, Jash Shah, Masoud Rouhizadeh, Casey Taylor

This project provides a manually annotated dataset of social determinants of health—social support, occupation, and substance use—linked to pregnancy outcomes, extracted from MIMIC-III and MIMIC-IV discharge summary notes.

Published: Aug. 4, 2025. Version: 1.0.0

Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: July 22, 2025. Version: 1.1.0

Database Open Access

tOLIet: Single-lead Thigh-based Electrocardiography Using Polimeric Dry Electrodes

Aline Santos Silva, Hugo Plácido da Silva, Miguel Correia, Andreia Cristina Gonçalves da Costa, Sérgio Laranjo

We present tOLIet, the first thigh ECG dataset with real signals captured by a toilet seat with electrodes. There are 149 recordings from 86 people, useful for research into cardiovascular assessment using "invisible" ECG.

Published: June 24, 2025. Version: 1.0.0

Database Open Access

Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection

Or Abramovich, Hadas Pizem, Jonathan Fhima, Eran Berkowitz, Ben Gofrit, Jan Van Eijgen, Eytan Blumenthal, Joachim Behar

HYGD is a rigorously annotated fundus image dataset with gold-standard clinical labels designed to improve and benchmark deep learning models for accurate glaucoma detection.

ophthalmology retina dfi gold-standard gon fundus glaucoma

Published: June 3, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Cardiac Disease

Jiawei Cao, Sendong Zhao

The subset of the MIMIC-IV dataset includes the examination results and diagnostic information of 4,761 cardiac disease patients. The examination results for each patient are listed separately as evidence for the final diagnosis.

Published: May 6, 2025. Version: 1.0.0

Database Restricted Access

DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

Ke Wang, Jiamu Yang, Ayush Shetty, Jessilyn Dunn

We present high resolution wearable device multichannel data along with clinical labeled and recorded sleep stage and polysomnography (PSG) data from 100 sleep abnormal patients with sleep apnea.

wearable sleep disorders biomedical time series classification

Published: April 30, 2025. Version: 2.1.0

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Mingquan Lin, Song Wang, Yiliang Zhou, Yishu Wei, Hao Chen, Atlas Wang, Yifan Peng

CXR-LT 2024 was a challenge for long-tailed, multi-label, and zero-shot thorax disease classification on chest X-rays, held at MICCAI 2024. This page contains long-tailed labels for 45 diseases from the CXR-LT 2024 and 2023 challenges.

disease classification artificial intelligence chest x-ray deep learning computer-aided diagnosis long-tailed learning cardiopulmonary disease zero-shot learning

Published: March 19, 2025. Version: 2.0.0