Resources


Database Restricted Access

REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays

Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, Jessica Chan, Phuong-Anh Duong, Vivek Srikumar, Trafton Drew, Joyce Schroeder, Tolga Tasdizen

This dataset contains 3032 cases of eye-tracking data collected while five radiologists dictated reports for frontal chest x-rays, synchronized timestamped dictation transcription, and manual labels for validation of localization of abnormalities.

eye tracking radiology report computer vision machine learning chest x-rays radiology reflacx fixations gaze deep learning

Published: Sept. 27, 2021. Version: 1.0.0

Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

multimodal machine learning chest x-ray radiology scene graph visual dialogue object detection semantic reasoning bounding box relation extraction knowledge graph explainability reasoning chest cxr visual question answering deep learning disease progression

Published: July 13, 2021. Version: 1.0.0

Database Credentialed Access

RadNLI: A natural language inference dataset for the radiology domain

Yasuhide Miura, Yuhao Zhang, Emily Tsai, Curtis Langlotz, Dan Jurafsky

A radiology NLI dataset introduced in the paper: Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation

Published: June 29, 2021. Version: 1.0.0

Database Credentialed Access

Curated Data for Describing Blood Glucose Management in the Intensive Care Unit

Aldo Robles Arévalo, Roselyn Mateo-Collado, Leo Anthony Celi

The data subsets consist of time series files that includes all the curated entries of glucose readings and insulin inputs from MIMIC-III database.

insulin replacement therapy glycemic control critical care

Published: April 19, 2021. Version: 1.0.1

Database Credentialed Access

Paediatric Intensive Care database

Haomin Li, Xian Zeng, Gang Yu

PIC (Paediatric Intensive Care) is a large paediatric-specific, single-centre, bilingual database comprising information relating to children admitted to critical care units at a large children’s hospital in China.

intensive care pediatrics critical care natural language processing

Published: Nov. 12, 2020. Version: 1.1.0

Database Restricted Access

Smartphone-Captured Chest X-Ray Photographs

Po-Chih Kuo, ChengChe Tsai, Diego M Lopez, Alexandros Karargyris, Tom Pollard, Alistair Johnson, Leo Anthony Celi

Smartphone-captured CXR images including photographs taken from MIMIC-CXR and CheXpert, photographs taken by resident doctors, and photographs taken with different devices.

smartphone photograph cxr

Published: Sept. 27, 2020. Version: 1.0.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

audio convolutional network heatmap eye tracking multimodal machine learning chest x-ray radiology explainability chest cxr deep learning

Published: Sept. 12, 2020. Version: 1.0.0

Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

mimic natural language inference recognizing textual entailment

Published: Nov. 28, 2019. Version: 1.0.1

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Database Open Access

BIDMC PPG and Respiration Dataset

ECG signals extracted from the MIMIC-II Matched Waveform Database, with manual breath annotations added by annotators using impedance respiratory signal.

multiparameter photoplethysmogram ecg

Published: June 20, 2018. Version: 1.0.0

Visualize waveforms